PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca19130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family LBD
Protein Properties Length: 232aa    MW: 25840.8 Da    PI: 7.3247
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca19130.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.54e-37261261100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+k+C++apyf aeq + +fa+vhk+FGasn +kll ++p ++r da+ +l+yeA  r+rdPvyG+v+++++lqqq+ ++++ela+++
  Dca19130.1  26 PCGACKYLRRKCVKGCIFAPYFDAEQgTIHFAAVHKVFGASNASKLLLKIPVNRRVDAVVTLCYEALSRVRDPVYGCVSHLFSLQQQVLNMQSELASVQ 124
                 7************************9889*******************************************************************999 PP

      DUF260  99 ee 100
                 ++
  Dca19130.1 125 AR 126
                 76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.33825127IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-3626124IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSNNIHHQHH WPNNNNNNNS NNNNGPCGAC KYLRRKCVKG CIFAPYFDAE QGTIHFAAVH  60
KVFGASNASK LLLKIPVNRR VDAVVTLCYE ALSRVRDPVY GCVSHLFSLQ QQVLNMQSEL  120
ASVQARLSTL QHTTQTFPTA NNTPQAFFDQ ISSSSSSTTT ITTTSSMPSV DNVSHYYSQP  180
MTSTFASTAA EFNGLTDNHH DDMFMEDDDL QTLTREFVTR YLPGVKLKSE PS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692268.11e-97PREDICTED: LOB domain-containing protein 19
SwissprotO221323e-64LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A0J8BJ781e-97A0A0J8BJ78_BETVU; Uncharacterized protein
STRINGVIT_15s0048g00840.t013e-74(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.19e-65LOB domain-containing protein 19